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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12928893_12929738_R

Intron Information:

Intron Rank:
68
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12928893 - 12929738
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
SIAALLQEAKGLIFYDTKVT
Intron Amino Acid Position:
3983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.2
82.3
32.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
85.6
27.9
Minor 5ss
40.2
-1.1
2.8
53
44.1
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334