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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12929886_12930667_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12929886 - 12930667
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCCCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTCTGACT
Flanking Amino Acid:
AADPRISCLLNVPVESLRLR
Intron Amino Acid Position:
3934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.5
33.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.7
0.71
0.8
78.7
28.4
Minor 5ss
40.8
-1
3
49.9
40.8
Minor BPS
66.6
0.6
1.6
84.79
35.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334