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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12930859_12931651_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12930859 - 12931651
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGCATTTCAACA
Flanking Amino Acid:
LSCGYDLHFERCACIDARHA
Intron Amino Acid Position:
3870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.2
0.75
0.9
80.5
36.7
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
51.4
0.04
1.6
60.46
39.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334