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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12931776_12932112_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12931776 - 12932112
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGTA
5'SS Class:
major
3'SS Sequence:
TCTCTGCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
AAGTCATTAACT
Flanking Amino Acid:
PEKSPTKKQEVPEEKYLTLD
Intron Amino Acid Position:
3829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68
37.3
Major BPS
79
0.72
1
69
38.9
Major PPT
76.4
0.59
0.9
73.6
36
Minor 5ss
32.7
-2
3.7
47
48.4
Minor BPS
70.4
0.72
1.6
81.31
39.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334