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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12932220_12932406_R

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12932220 - 12932406
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GAAACTTTAATT
Flanking Amino Acid:
TKEKSVLNSVSRTALSEKKP
Intron Amino Acid Position:
3793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.8
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.3
0.66
0.7
78.2
30.7
Minor 5ss
33.6
-1.9
3.1
44.2
43.6
Minor BPS
65.1
0.55
1.3
71.81
38.9

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334