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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12932892_12933183_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12932892 - 12933183
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATACTC
Flanking Amino Acid:
EDYFNDKSIKGEKLVPGARE
Intron Amino Acid Position:
3668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.8
0.56
1
75.1
39.1
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
48.8
-0.1
1.8
63.46
36.5

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334