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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12933392_12934750_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12933392 - 12934750
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTTACA
Flanking Amino Acid:
RPIKGFAVVEIRSRAKIEKI
Intron Amino Acid Position:
3599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.8
0.96
0.7
88.1
28.6
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
66.6
0.51
1.5
76.69
33.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334