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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12936514_12936734_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12936514 - 12936734
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGACC
Flanking Amino Acid:
TPTDKVHIKLGVSPPPGAVL
Intron Amino Acid Position:
3104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.4
30.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
0.8
76.2
32.4
Minor 5ss
37.4
-1.4
3.2
51.9
44.9
Minor BPS
61.5
0.34
2
80.41
33.9

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334