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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12936941_12937167_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12936941 - 12937167
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GATCTTTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CGTTCTTGATCT
Flanking Amino Acid:
CKESQSGFRKDSSLYKAPWA
Intron Amino Acid Position:
3035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75
0.56
0.8
73.3
36.8
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
55.7
0.26
1.8
73.38
43.5

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334