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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12937299_12937612_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12937299 - 12937612
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTACCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
GTTACCTTACAG
Flanking Amino Acid:
LTKQICSFLQTAPEQFPAEE
Intron Amino Acid Position:
2992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
80.7
0.69
0.9
73.3
37
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
54.3
-0
1.9
62.53
44.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334