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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12937819_12939215_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12937819 - 12939215
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGATCTCCAAAT
Flanking Amino Acid:
SNQLLAPPLPDGTISSSSIL
Intron Amino Acid Position:
2923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.9
0.74
0.9
76.7
36.2
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
47.7
-0
1.9
68.48
41.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334