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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12939398_12940098_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12939398 - 12940098
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATATTTTGATA
Flanking Amino Acid:
TLDNTNIQIHRELLRSEAAL
Intron Amino Acid Position:
2862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
73.5
41.9
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
55.5
0.17
1.2
61.02
32.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334