Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12940260_12940423_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12940260 - 12940423

Intron Length:

164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTAAA

5'SS Class:

major

3'SS Sequence:

TTTGGTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

CTGTGTTTGACA

Flanking Amino Acid:

LHGVVLDVDSVNELVQVETY

Intron Amino Acid Position:

2809

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

73.4

32.4

Major BPS

79.4

0.73

80.1

Major PPT

78.4

0.64

69.2

46.1

Minor 5ss

31.8

-2.1

2.7

38.8

40.3

Minor BPS

55.4

0.16

1.8

65.32

Associated Gene:

Gene:

HECTD4

Ensembl Gene ID:

ENSAPLG00000015991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016725

12924158 - 12990491

66334