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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12940561_12940677_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12940561 - 12940677
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
AAGTGCTGAGCC
Flanking Amino Acid:
NKFTIDKVRKGLTVVTRSPD
Intron Amino Acid Position:
2763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
83.6
0.76
0.9
76.7
37.4
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
45.4
-0.3
2
55.09
42.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334