About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12941563_12941732_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12941563 - 12941732
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCGTCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TACTAAATAACT
Flanking Amino Acid:
DDDDDDDIPREDHYALLVKA
Intron Amino Acid Position:
2675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
77.9
38.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
77.5
0.62
0.8
71.9
32.8
Minor 5ss
40.6
-1
2.9
49.4
46.6
Minor BPS
49.2
0.02
2
72.89
43

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334