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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12945742_12946168_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12945742 - 12946168
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
CCCCCACCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGAATTTAACT
Flanking Amino Acid:
LSRLCVPRSEALPLHKLSIT
Intron Amino Acid Position:
2235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
62.2
0.28
0.9
59.1
30.2
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
67.3
0.62
1.5
81.67
39.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334