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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12946340_12946574_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12946340 - 12946574
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TCTTTGGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATGTAAAC
Flanking Amino Acid:
ETIKIGSEVQVLGKGIAGSI
Intron Amino Acid Position:
2178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.8
0.63
0.9
72.9
37.4
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
47.6
-0.2
2.2
64.09
41.6

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334