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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12947442_12947625_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12947442 - 12947625
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAAAA
Flanking Amino Acid:
ICRERNSELARTDPVRPFIS
Intron Amino Acid Position:
2071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.7
0.51
0.9
67.8
37.8
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
58.4
0.26
1.5
68.85
37.5

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334