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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12948553_12949675_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12948553 - 12949675
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATTTTCACT
Flanking Amino Acid:
SSHEVLQPLLSSSEGRPFRL
Intron Amino Acid Position:
1976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.2
0.45
0.9
66.2
34.4
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
63.2
0.5
1.8
83.78
37.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334