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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12949866_12950162_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12949866 - 12950162
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
TTTCTAATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCTTTCTAATT
Flanking Amino Acid:
LAKLADYVVPGCQTVLSPTA
Intron Amino Acid Position:
1913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.8
0.49
1.1
69.5
39.8
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
56.1
0.27
1.7
71.16
41

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334