Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12950444_12950776_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12950444 - 12950776

Intron Length:

333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTAGGC

5'SS Class:

major

3'SS Sequence:

CTCCCCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

CAGCAGTTAATT

Flanking Amino Acid:

DVLSLLNDLSRSHIGKAILS

Intron Amino Acid Position:

1819

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

57.3

40.6

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

0.67

0.7

76.5

25.5

Minor 5ss

29.8

-2.3

3.5

42.4

44.4

Minor BPS

45.2

-0.2

2.2

59.32

Associated Gene:

Gene:

HECTD4

Ensembl Gene ID:

ENSAPLG00000015991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016725

12924158 - 12990491

66334