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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12951528_12951821_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12951528 - 12951821
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTACTGAATT
Flanking Amino Acid:
IGLLCTIPYTRSEEKCLVRS
Intron Amino Acid Position:
1706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.8
39.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.8
0.63
0.9
72.5
36.8
Minor 5ss
31.7
-2.1
3.1
39.5
46
Minor BPS
61.9
0.45
1.6
77.67
38.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334