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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12951969_12952542_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12951969 - 12952542
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TTGCTGCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGCTGCTAACA
Flanking Amino Acid:
PVTMVLQGGPRIEELTCGGM
Intron Amino Acid Position:
1657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
71.1
0.48
1
65.9
39.8
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
46.8
-0.2
2.3
64.98
41.4

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334