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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12952710_12952828_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12952710 - 12952828
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TAATATCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AAATAAATAAAT
Flanking Amino Acid:
AFIGTNPDQAVSSSSFLLAA
Intron Amino Acid Position:
1602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.4
37.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
68.2
0.41
0.9
62.1
39.1
Minor 5ss
30.9
-2.2
3
42
44.5
Minor BPS
43.9
-0.3
2
62.13
40.1

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334