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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12952971_12953124_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12952971 - 12953124
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACAAG
5'SS Class:
major
3'SS Sequence:
TATGTTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTGTGCCTAATT
Flanking Amino Acid:
EDIEFARSSQRRRHVTSHRS
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
63.9
42
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74.7
0.55
0.8
69.3
36.6
Minor 5ss
44.2
-0.6
2.7
56.4
48
Minor BPS
50.7
0.1
2.1
72.05
45.3

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334