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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12953596_12954134_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12953596 - 12954134
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCACAATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAATC
Flanking Amino Acid:
SDLENVVLALREKFFQEVNS
Intron Amino Acid Position:
1450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77.3
37.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.5
0.46
0.9
66.7
38.1
Minor 5ss
32.4
-2
2.5
38
39.5
Minor BPS
58.8
0.26
1.8
75.28
35.1

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334