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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12954412_12954596_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12954412 - 12954596
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TAAGTCTTATTT
Flanking Amino Acid:
KLNAMERQLQSVAELEQKWQ
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
76.4
0.59
0.9
77.4
36.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
54.3
0.21
1.7
69.26
42.1

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334