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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12955181_12955331_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12955181 - 12955331
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
QELLRSKLLQRCQWQVEANG
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334
ENSAPLT00000016606
12954916 - 12967822
12907