About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12957594_12959010_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12957594 - 12959010
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTTACA
Flanking Amino Acid:
RCSSQYDYDKLVIYAGPNTN
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.3
0.55
1.1
75.4
38.4
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
61.9
0.37
1.9
80.2
35.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334