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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12957621_12959010_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12957621 - 12959010
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTCTTACA
Flanking Amino Acid:
RCSSQYDYDKSNSVFYVLKL
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
93
0.97
0.6
88.1
21.9
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
61.9
0.37
1.9
80.2
35.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016606
12954916 - 12967822
12907