About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12960356_12960625_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12960356 - 12960625
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACGTTTCTAACA
Flanking Amino Acid:
LVQLVLYTSQTALLLKTQSP
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.4
0.73
0.8
76.9
32
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
53.2
0.1
1.7
61.39
39.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334
ENSAPLT00000016606
12954916 - 12967822
12907