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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12961744_12962922_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12961744 - 12962922
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
AGTATCTTAACT
Flanking Amino Acid:
SLQGETLKVQELKTSILSLA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.1
37.7
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
72.6
0.51
0.9
68.8
36.3
Minor 5ss
40
-1.1
2.9
52.8
44.1
Minor BPS
75.1
0.87
1.2
83.96
36.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016606
12954916 - 12967822
12907