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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12961744_12962928_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12961744 - 12962928
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGTA
5'SS Class:
major
3'SS Sequence:
TTCTTGTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
AGTATCTTAACT
Flanking Amino Acid:
DSSLQGETLKELKTSILSLA
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
66.6
39
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
72.6
0.51
0.9
68.8
36.3
Minor 5ss
31.1
-2.2
3.9
46.3
49
Minor BPS
75.1
0.87
1.2
83.96
36.2

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334