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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12964841_12965487_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12964841 - 12965487
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
GTTTTCTGCATT
Flanking Amino Acid:
NNLLKLVLTEGERNSGLSQL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
75.7
0.58
0.9
73.3
36.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
54.6
0.23
1.9
77.06
39.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334
ENSAPLT00000016606
12954916 - 12967822
12907