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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12965559_12967136_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12965559 - 12967136
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GGTACATTAAAT
Flanking Amino Acid:
EIQKEVCLAISSGLNILYPG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.2
0.81
0.7
85.6
29.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
56.8
0.29
1.8
73.76
41.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334
ENSAPLT00000016606
12954916 - 12967822
12907