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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12969206_12970547_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12969206 - 12970547
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTGATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTTGTTTGATT
Flanking Amino Acid:
ISNTLKEDQAAANTSCGLPL
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.7
40.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
87.3
0.84
0.8
84.8
35.4
Minor 5ss
28.3
-2.5
2.7
32.6
41.6
Minor BPS
67.2
0.62
1.7
86.34
34.1

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334