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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12970741_12972237_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12970741 - 12972237
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
CTCTATTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
SVFMDVFELIVENGICIANP
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.6
36.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
72.7
0.51
0.9
69.2
35.4
Minor 5ss
40.5
-1.1
2.9
50.2
41.5
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334