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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12973437_12974070_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12973437 - 12974070
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGTACT
Flanking Amino Acid:
KLGSGLHGTLRGFVYCRNEE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.9
88
29.4
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
48.7
-0
2.2
79.74
41.3

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334