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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12974180_12976505_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12974180 - 12976505
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTTCCTGATTC
Flanking Amino Acid:
ANTSSSGENKDADLGRCLAA
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.5
0.57
0.9
73.2
36.3
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
60.3
0.3
1.7
71.02
40.7

Associated Gene:

Gene:
HECTD4
Ensembl Gene ID:
ENSAPLG00000015991
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016725
12924158 - 12990491
66334