About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13006764_13007311_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13006764 - 13007311
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
CTGCTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTAACATTATTC
Flanking Amino Acid:
EGEIFDTEKEKYELTEQRKK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
72.4
38.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
72.5
0.51
0.8
65.2
36.2
Minor 5ss
33.3
-1.9
3.2
39.9
40.1
Minor BPS
47.8
-0.1
1.9
58.39
40

Associated Gene:

Gene:
RPL6
Ensembl Gene ID:
ENSAPLG00000015787
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016469
13006611 - 13009613
3003