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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13007497_13007840_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13007497 - 13007840
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
AACCTGTTATCC
Flanking Amino Acid:
QLSTGLLLVTGPLVINRVPL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
73.5
0.53
0.9
70.3
36.4
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
43.2
-0.5
2.1
50.71
40

Associated Gene:

Gene:
RPL6
Ensembl Gene ID:
ENSAPLG00000015787
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016469
13006611 - 13009613
3003