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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13008709_13009207_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13008709 - 13009207
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TGGTCGGTAAAA
Flanking Amino Acid:
GSRVVKVRKMPRYYPTEDVP
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
83.8
0.76
0.7
76.9
31.8
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
44.3
-0.4
2.6
61.11
44.7

Associated Gene:

Gene:
RPL6
Ensembl Gene ID:
ENSAPLG00000015787
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016469
13006611 - 13009613
3003