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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13014409_13015509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13014409 - 13015509
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAACGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCTTTCAAAC
Flanking Amino Acid:
SNPGDFTLSVRRTGAVTHIK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
62
0.27
1
60.7
40.1
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
55.4
0.15
1.6
69.06
36

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016021
13014272 - 13031629
17358