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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13015705_13016705_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13015705 - 13016705
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCAAT
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
CTTTCTTTAAAG
Flanking Amino Acid:
PLNCADPTSERWFHGHLSGR
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.3
77.9
38.6
Major BPS
53
0.08
1
61.4
34.3
Major PPT
74.7
0.56
1
74.9
33.2
Minor 5ss
36.5
-1.5
2.9
48.8
47
Minor BPS
71.4
0.53
1.5
72.3
40.7

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023387
13015510 - 13032222
16713
ENSAPLT00000016021
13014272 - 13031629
17358