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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13016899_13018122_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13016899 - 13018122
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTATTTTGACG
Flanking Amino Acid:
KVTHVMIHCQDLKYDVGGGE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.5
0.53
1
71.4
38.7
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
65.8
0.35
1.4
70.49
36.9

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023387
13015510 - 13032222
16713
ENSAPLT00000016021
13014272 - 13031629
17358