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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13023577_13023691_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13023577 - 13023691
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGGTTGTTAAAT
Flanking Amino Acid:
SDYINANIIMPEFETKCNNS
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.7
0.78
0.8
77.9
36.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
53
0.17
2.2
73.4
43.4

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023387
13015510 - 13032222
16713
ENSAPLT00000016021
13014272 - 13031629
17358