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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13026538_13027077_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13026538 - 13027077
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
RELKLSKVGQGNTERTVWQY
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.6
0.73
0.8
73.8
36.2
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023387
13015510 - 13032222
16713
ENSAPLT00000016021
13014272 - 13031629
17358