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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13027919_13028102_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13027919 - 13028102
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAACA
Flanking Amino Acid:
DILIDIIREKGVDCDIDVPK
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.8
0.6
0.9
72.6
37.5
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
84.8
1.09
1
86.8
31.8

Associated Gene:

Gene:
PTPN11
Ensembl Gene ID:
ENSAPLG00000015307
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023387
13015510 - 13032222
16713
ENSAPLT00000016021
13014272 - 13031629
17358