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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13074908_13075137_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13074908 - 13075137
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCGCTGCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GGGTGTGTAATT
Flanking Amino Acid:
KLHLLPGASKSNKLRTKTLR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
64.4
0.33
1
57.3
38.6
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
44.4
-0.3
2.3
60.57
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021891
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027862
13074845 - 13075329
485