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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13144074_13144562_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13144074 - 13144562
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
VDKNKNPDFKVFRYSTTLEK
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.5
0.91
0.7
89.1
27.7
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848